GBS black dry beans - SRA

SRX25408520: GBS black dry beans
1 ILLUMINA (Illumina HiSeq 4000) run: 363.9M spots, 18.2G bases, 6.1Gb downloads

Design: DNA was extracted from trifoliate leaves using NucleoSpin Plant II Kit following the Genomic DNA from plant protocol. DNA concentration was measured by using Quant-iTTM PicoGreenTM dsDNA Assay Kit, and 10 ng/ul of DNA was used for GBS library preparation according to Elshire et al. 2011 with a single restriction enzyme, ApeKI. Each plate of 96-wells was sequenced in a lane of an Illumina HiSeq platform using single-end reads at RTSF Genomics Core at Michigan State University.

Submitted by: Michigan State University

Study: GBS data - Black bean breeding lines (BLB)

PRJNA1138671 • SRP521339 • All experiments • All runs

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Evaluate the prediction accuracy of agronomic and end-use quality traits in single-trait and multi-trait genomic prediction models in a population of black bean breeding lines over two growing seasons.

Sample: BBL_Plate2_S2_L002

SAMN42731942 • SRS22069828 • All experiments • All runs

Organism: Phaseolus vulgaris

Library:

Name: BBL_Plate2_S2_L002_R1_001

Instrument: Illumina HiSeq 4000

Strategy: GBS

Source: GENOMIC

Selection: Reduced Representation

Layout: SINGLE

Runs: 1 run, 363.9M spots, 18.2G bases, 6.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR29913415	363,852,095	18.2G	6.1Gb	2024-07-22

ID:: 34005207

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